Following the events of the original '95 film, Motoko returns to you and her apartment in the new body she had. Thankfully, she gets a new one days later, which has a much better physique, one you're willing to help the Major test out.
You had been at the home of Major Motoko Kusanagi for some time. Although to be fair, it was technically your home as well. You were a "relaxation partner" assigned to the Major for specific purposes, that being to pleasure her when she needed it. It was a means of obtaining shelter in tough ti...